smarts.bio Studio: Analyze Biological Data Without Writing Code
Upload a file, run BLAST on a FASTA sequence, explore a protein in the knowledge graph, and convert a BAM file to SAM — all in your browser, in three minutes, without a line of code.
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Analyze biological data without writing code. In this three-minute getting started tutorial you'll upload a file, run BLAST on a FASTA sequence, explore a protein in a knowledge graph, and convert a BAM file to SAM — all in your browser with smarts.bio Studio.
smarts.bio is an AI bioinformatics platform built for biologists. Instead of command-line tools and scripts, you ask in plain language and the smarts.bio agent picks the right tools, runs them, and explains the results. It connects 100+ bioinformatics tools and databases, including BLAST, GATK, samtools and protein structure prediction.
In this video:
A quick tour of smarts.bio Studio Uploading FASTA, BAM, VCF, PDB and other files One-click protein sequence analysis with BLAST and database annotations Exploring genes, pathways and protein interactions in the graph viewer Converting BAM to SAM with a single sentence Tracking running jobs and finding your results
Chapters:
0:00 Intro 0:15 Studio overview 0:45 Uploading a file 1:05 Analyzing a FASTA file (BLAST + databases) 1:50 Running a process: BAM to SAM 2:20 Checking running processes 2:45 Next steps
Also available in VS Code, JupyterLab, and as an MCP connector for Claude and ChatGPT.